Korean, Edit

Modeling Organism Library

Recommendation: 【Bioinformatics】 Bioinformatics Analysis Index

1. Homo sapiens (human)

⑴ All genes are capital letters.

⑵ 36601 units based on GRCH38 reference (ENSG) (ref)

⑶ human gene annotation (24424 genes)

① Gene ID

② Entrez ID

③ chromosome number, start, end, width

④ strand

⑤ transcript ID (transcript_id)

⑥ bioType

⑦ aliases

⑧ protein ID (p_id)

⑨ description

2. Mus musculus (mouse)

⑴ Only the first letter of the gene is uppercase and the rest is lowercase.

⑵ 32285 units based on mm10 reference (ENSMUSG)

⑶ Gene homology between human and mouse genes

⑷ mouse gene annotation (23282 genes)

① Gene ID

② Entrez ID

③ chromosome number, start, end, width

④ strand

⑤ protein ID (p_id)

⑥ transcript ID (transcript_id)

⑦ tss_id

⑧ bioType

⑨ aliases

⑩ description

3. E. coli

⑴ 2,639 genes based on ASM584v2 (K-12) references.

⑵ Refer to E. coli wiki.

4. Danio rerio (zebrafish)

⑴ 47394 genes based on GRCz11 reference.

⑵ Contain 70% of human genes.

⑶ Researchers easily manipulate genetic information before and after fertilization.

⑷ Unlike mammals, there is no lung, prostate, mammary gland, etc.

5. Arabidopsis thaliana (Baby pole)

⑴ Sequenced in 2000: The fisrt plant sequenced.

⑵ 38309 genes based on TAIR10.1 reference.

6. Aspergillus fumigatus

⑴ 9,870 genes based on ASM265v1 reference.

7. Bos taurus (cow)

⑴ 30842 genes based on ARS-UCD 1.3 reference.

8. Cenorhabditis elegans

⑴ Sequenced in 1998: The first multicellular eukaryote sequenced

⑵ 46928 genes based on WBcel235 reference.

9. Drosophila melanogaster (fruit fly)

⑴ Sequenced in 2000.

⑵ 17616 genes based on Release 6 plus ISO1 mitochondrial genome reference.

10. Gallus gallus (chicken)

⑴ 25,486 genes based on bGalGal1.mat.broiler.GRCg7b reference.

11. Oryza sativa (rice)

⑴ 35222 genes based on IRGSP-1.0 reference.

12. Pyrenophora teres (one of the botanical pathogens)

⑴ Based on ASM1433481v1 reference, … (no reference data currently available)

13. Rattus norvegicus (rat)

⑴ 35236 genes based on mRatBN7.2 reference.

14. Saccharomyces cerevisiae (yeast)

⑴ Sequenced in 1996: the first eukaryotic genome sequenced.

⑵ 6464 genes based on R64 reference.

15. Zea mays (corn)

⑴ 46263 genes based on Zm-B73-REFERENCE-NAM-5.0 reference.

16. Oryctolagus cuniculus (rabbit)

⑴ 29480 genes based on UM_NZW_1.0 reference

⑵ 29480 genes based on OryCun2.0 reference

⑶ chromosome location and annotation made by Broad Institute

Input: 2022.07.20 19:46

Revised: August 23, 2022 09:24