Chapter 7. Heredity and Genetics
Higher category: 【Biology】 Biology Index
b. Difficult Problems on Genetics
c. Gene Library
1. Genes and Chromosomes
⑴ Genetics before Mendel
① Sperm inheritance
② Oocyte inheritance
③ Blending inheritance
④ Particle theory: Mendel insists on particle theory, followed by an official adoption.
Figure 1. Genetics before Mendel
⑵ Classical hypothesis about the relationship between genes and chromosomes
① Sutton’s Chromosome Theory: Genes are small particles in the chromosome.
② Morgan’s Chromosome: Allele is at the same locus on the gene.
⑶ Classical experiment that identified DNA as a genetic material
① Transformation experiment
○ Griffith experiment: R-type bacteria are transformed into S-type.
○ Avery experiment: Advances Griffith’s experiment and reveals that DNA is the material that causes transformation.
② Hershey and Chase Experiment
○ 1st. Bacteriophage are labeled with radioactive isotopes: 32P for DNA labeling, 35S for protein labeling.
○ 2nd. Infect the E. coli and culture it.
○ 3rd. Use a blender to separate the E. coli from the phages.
○ 4th. Use centrifugation to separate the nuclei and the rest.
○ Composition of DNA: C, H, O, N, P
○ Composition of proteins: C, H, O, N, S
○ Demonstrated that DNA is the genetic material using E. coli and T2 phages.
○ E. coli and T2 phages have significant size differences, making separation possible.
③ Additional evidence that DNA is genetic material
○ Chargaff’s rules: [A] = [T], [G] = [C] (proven by paper-chromatography)
○ The amount of DNA in all somatic cells of an individual is the same.
○ DNA amount fluctuates during cell division.
○ Highest mutation rate for light at 260 nm (DNA maximum absorption wavelength). No mutation at 280 nm.
⑷ Amount of DNA
① One chromosome consists of one DNA.
② One chromosome consists of 107 - 1010 bp.
③ Total amount of DNA consists of 3 × 109 bp.
⑸ Gene: DNA sequence that encodes a protein and is transcribed into mRNA.
① Full length of the human genome = 3 billion base pairs
② About 30,000 genes in the human genome. Total length of genes = 50 million base pair
③ 103 -106 bp for each gene
④ Allele: Different genes with different sequences at the same locus on DNA.
⑤ Siblings on average share about 50% of allele.
⑥ Reason: This is because the probability of a given gene matching either the paternal or maternal side is 50%.
2. Mendel Genetics
⑴ Genotypes and Phenotypes
① Character: Features that differ between individuals (e.g., Color).
② Allelic character: Characters that can be clearly contrasted with each other among traits (e.g., The shape is more clearly defined as round in contrast to wrinkled.)
③ Trait (phenotype): Type of character represented by an individual (e.g., Purple, Red)
○ Wild type (wt), mutant (mt), dominant trait, recessive trait
④ Genotype: Type of gene an individual has.
○ Homozygote: The case that both allele are the same (e.g., AA, BB, OO)
○ Heterozygote: The case that two alleles are different (e.g., AB, AO)
⑤ Recessive trait: Phenotypes of allele only in homozygotes (e.g., OO)
⑥ Dominant trait: Phenotypes that also appear in heterozygotes (e.g., AA, AO; BO, BB)
⑦ Carrier: Heterozygote for recessive disease
⑧ Mating
○ Unisexual mating (e.g., Aa), bisexual mating (e.g., AaBb)
○ Self-pollination (↔ Cross pollination): Breeding between individuals with the same genotype, often used for improving a breed.
○ Testcross: By mating an individual with a homozygous recessive individual, the genotype can be determined.
○ Reciprocal cross: Breeding a maternal line with the father’s genotype and a paternal line with the mother’s genotype. This can determine whether there is sex-linked inheritance.
○ p generation, F1 generation (hybrid first generation), F2 generation (hybrid second generation)
⑵ Mendel’s law
① Mendelian traits: Traits for which the pattern of inheritance can be easily determined, as in Mendel’s experiments.
② Plant hybrid research (1860s): Study on the inheritance of seven allelic traits in peas, with clear dominance and recessiveness.
○ Shell of peas: Round gray, Wrinkled white
○ An allele encodes an enzyme called SBE (starch branching enzyme), which is related to amylopectin.
○ Wrinkled peas have higher osmotic pressure: they become wrinkled when they absorb water and swell, then dry.
○ Color of peas: Yellow, Green
○ Color of flowers: White, Purple (Red)
○ Shape of pods: Smooth pods, Creased pods
○ Color of pods: Yellow, Green
○ The place where flowers bloom: Between the branches, or at the top.
○ Stem size: Big, Small
③ Advantages of peas
○ Peas have a short generation (3 months).
○ Pea leaves a lot of offspring.
○ Pea is easy to grow and easy to control reproduction.
○ Peas are capable of both self-fertilization and cross-fertilization.
○ Pea traits and dominance/recessiveness are very clear.
○ Although the alleles are linked and positioned far apart, they seem to adhere to the law of independence.
④ Highlights the design of experiments and the importance of mathematical thinking (statistics) of results.
○ Mendel conducts testcross to determine if an individual is true-breeding.
⑤ Mendel’s law
○ Several types of allele are used to determine traits.
○ The Law of Dominance: When pure lines with opposing traits are crossed, only one of the parent’s traits appears in the F1 generation.
○ This means that in a heterozygous individual, only one allele’s trait is expressed.
○ The trait that appears in heterozygotes is dominant, while the other is recessive.
○ This contrasts with the blending inheritance hypothesis.
○ The Law of Segregation: Since reproductive cells contain half the genetic material, only one of the two alleles is passed on.
○ An individual inherits only two alleles, one from each parent.
○ The forked line method can be applied.
○ The Law of Independence: Genes that are not in an allelic relationship are assumed to assort independently during gamete formation. Doesn’t consider linkage along the same chromosome.
○ A 9:3:3:1 ratio in the case of A_B_ : aaB_ : A_bb : aabb suggests independence.
⑶ Genotyping via Punnett square
① Example: Round yellow and wrinkled green
Figure 2. How to draw a Punnett square in Mendel pea experiment
⑷ Pedigree Analysis
Figure 3. Example of pedigree
⑸ Complementary Test (Cis-Trans Test)
① Definition: It is a test to determine whether certain genes related to a specific mutant trait are the same gene or different genes.
② Example: In the example below, there are a total of three mutant genes: Gene 1 (= Gene 3 = Gene 5), Gene 2, and Gene 4.
Figure 4. Example of complementary test
⑹ Hereditary diseases
① Achondroplasia
3. Linkage and Cross
⑴ Drosophila research
① Theoretical formulation of the linkage is made by studying fruit flies, starting with Morgan.
② Benefits of Drosophila as a Genetic Study
○ Readily available.
○ Breeding is easy and does not harm person.
○ Breeds a lot and breeds every 2 weeks.
○ Small number of chromosomes: 4 pairs of chromosomes.
⑵ Linkage
① Two or more non-alleles exist on the same chromosome and behave identically.
② Man has 23 linkage groups.
③ Cis-configuration and Trans-configuration
○ Cis-configuration (coupling): Individuals with AB and ab chromosomes
○ Trans-configuration (repulsion): Individuals with Ab and aB Chromosomes
○ When doing cross experiments, you should first determine whether you are based on cis-configuration or trans-configuration.
○ Case 1. Cis-configuration AaBb × Cis-configuration AaBb
○ The probability that the offspring have the same genotype as the parents is 1/2: (AB | ab) → (AB | ab)
○ There are 2 types of phenotypes in the offspring: A_B_, aabb
○ Case 2. Trans-configuration AaBb × Trans-configuration AaBb
○ The probability that the offspring have the same genotype as the parents is 1/2: (Ab | aB) → (Ab | aB)
○ There are 3 types of phenotypes in the offspring: A_B_, A_bb, aaB_
○ Case 3. Cis-configuration AaBb × Trans-configuration AaBb
○ There are 3 types of phenotypes in the offspring: A_B_, A_bb, aaB_
○ In Cases 1 to 3, A is dominant over a, and B is dominant over b.
④ Complete linkage and incomplete linkage
○ Complete linkage: Linkage that produces only parent type. If two genes are very close and have fewer offspring.
○ In other words, when there is 100% genetic linkage.
○ A_B_ : aaB_ : A_bb : aabb = 3:0:0:1 means cis-configuration complete linkage.
○ A_B_ : aaB_ : A_bb : aabb = 2:1:1:0 means trans-configuration complete linkage.
○ Incomplete linkage: Produces both parental and recombinant (crossover) traits.
⑶ Crossover
① Exchange between sister chromatid segments occurs when bivalent chromosomes (tetrad) are formed during the prophase of the first meiotic division.
○ First-Division Segregation (FDS): When there is no crossing over
○ Second-Division Segregation (SDS): When there is crossing over
○ Chiasma: The location where crossing over occurs. The number of chiasmata is proportional to chromosome length.
② The recombination rate is proportional to the distance between two linked genes.
③ Formula 1: Crossover rate = (Number of gametes where crossing over occurs ÷ Total number of gametes) × 100
④ Formula 2: Crossover rate = (Number of offspring resulting from crossing over in a test cross ÷ Total number of offspring obtained in a test cross) × 100
⑤ Multiple crossovers: The probability of multiple crossovers is theoretically equal to the product of the probabilities of each individual single crossover.
○ 1-2 crossover events typically occur for each chromosomal pair in each gamete.
⑥ The crossover rate is a maximum of 50%: When the distance between two genes is very large, they satisfy the law of independence, and in the case of independence, the crossover rate is 50%.
⑦ Issues with calculating crossover rate
○ If an even number of crossovers occur between two linked genes, they do not contribute to the crossover rate.
○ Interference: One crossover event can inhibit (negative interference, most commonly) or promote (positive interference) another crossover event.
○ As the distance between two genes increases, the crossover rate becomes less accurate.
○ In most cases, an equal and equivalent amount of DNA is exchanged. However, unequal crossover can result in copy number variants (CNVs) as well as inversions and translocations.
○ Crossover is non-random; over 25,000 small regions of elevated recombination have been characterized as recombination hotspots.
⑷ Gene map
① A plot of the location of genes on a chromosome based on crossover rates obtained by three-point test crosses.
○ Test cross: A cross between an individual that is heterozygous for all genes and a homozygous recessive individual.
○ 1st. Group the 8 organisms into pairs.
○ 2nd. The majority of pairs will display the parental type.
○ 3rd. At least one pair of individuals contains the gene located in the middle on the map: Using the double crossover rate
○ 4th. Calculate the crossover rate between the intermediate gene and each of the other genes to estimate map distance of genes.
② 1 cM (centi-Morgan): A map distance where the crossover rate is 1%.
③ Double crossovers
○ For values below 25 cM, there is an almost proportional relationship between recombination frequency and map distance.
○ For values above 25 cM, the crossover rate appears lower compared to the map distance.
○ Reason: This is due to the occurrence of double crossovers. In each gamete, typically 1–2 crossovers occur per chromosome.
○ Application: The crossover rate between the two most distant genes is smaller than the sum of the distances between the respective intermediate genes.
4. Non-mendel Genetics
⑴ Co-dominance: Both alleles are expressed as phenotypes.
① MN blood type
② ABO blood type: IA and IB are co-dominant. i is recessive.
Figure 5. ABO blood type inheritance
○ The gene encoding the glycoprotein on the surface of red blood cells located on chromosome 19.
○ AB type: IAIB
○ A type: IAIA or IAi
○ B type: IBIB or IBi
○ O type: ii
⑵ Incomplete dominance (intermediate inheritance)
① A complete phenotype is expressed only in homozygotes, while the phenotype of heterozygotes is intermediate.
② Quantitative inheritance: Usually pigments, receptors (e.g., Inheritance of hypercholesterolemia and LDL receptors)
③ Flower color of snapdragon: Rr × Rr
○ RR : Rr : rr = Red : Pink : White = 1:2:1
○ Tip: The inheritance of color is not a common dominant but an incomplete dominant.
⑶ Multiple allele inheritance: A case where more than three alleles exist at a single gene locus, often originating from mutations.
① The ABO blood type gene is determined by three alleles (multiple alleles).
⑷ Pleiotropy: The effect of a single allele influencing two or more phenotypes.
① Cystic fibrosis (CF): Recessive genetic disease
○ 1st. A defect in the CFTR gene on chromosome 7.
○ 2nd. Mutations occur in channels that transport chlorine ions out of epithelial cells.
○ 3rd. Excessive chloride ions are secreted, causing a significant amount of water to be released outside the epithelial cells.
○ Symptom: Accumulation of thick mucus, repeated lung infections, digestive problems, impaired liver function, shortened lifespan
○ Among white Americans, it occurs in approximately 1 in 2,500 individuals.
○ Pseudomonas aeruginosa lung infections are a major cause of death in CF patients.
② Hemophilia(factor Ⅶ): Excessive bleeding, bruising, joint pain and swelling, loss of vision, etc.
③ Sickle cell anemia
○ Definition: A disease caused by the substitution of the 6th amino acid in the β-chain of hemoglobin from glutamic acid (Glu, hydrophilic) to valine (Val, hydrophobic).
○ N terminal - Val - His - Leu - Thr - Pro - Glu/Val - Glu - ···
○ Types of hemoglobin variants: Approximately 500 Types
○ Most are caused by the substitution of a single amino acid in the globin polypeptide chain.
○ Example 1. HbS (sickle-cell Hb): Substitution of a single Glu with Val on the surface.
○ Example 2. Hb Cowtown: Removal of an ion pair involved in T-state stabilization.
○ Example 3. Hb Memphis: Substitution of a similar-sized residue on the surface with a polar but uncharged residue. Nearly a neutral mutation.
○ Example 4. Hb Bibba: Substitution of one Leu with Pro, affecting the α-helix.
○ Example 5. Hb Milwaukee: Substitution of one Val with Glu.
○ Example 6. Hb Providence: One Lysine (Lys) that normally sticks out at the center of the tetramer is replaced with Asparagine (Asn). This decreases BPG binding and increases oxygen saturation.
○ Example 7. Hb Philly: One Tyrosine (Tyr) is replaced with Phenylalanine (Phe), breaking a hydrogen bond at the α1β1 junction site. This increases BPG binding and decreases oxygen saturation.
○ Mechanism: When a hydrophilic amino acid is replaced with a hydrophobic amino acid, huge structural changes occur.
○ Clumping (fibrosis) of mutant hemoglobin: Due to hydrophobic interactions, hemoglobin molecules stick together and form fibers.
○ The formation of fibers is the reason why hemoglobin takes on a sickle shape.
○ The same genetic mutation is not observed in myoglobin: This is because myoglobin functions as a single monomer.
○ Trait based on genetic type
○ Dominant homozygous: Normal red blood cells.
○ Recessive homozygotes: Sickle-shaped red blood cells, significantly increased resistance to malaria (↑↑), but severely reduced oxygen transport efficiency (↓↓).
○ Heterozygotes: Some red blood cells are sickle-shaped, increased resistance to malaria (↑), and slightly reduced oxygen transport efficiency (↓).
○ Symptoms: Rheumatoid arthritis, atherosclerosis, dementia, weakened immunity, stroke, and heart weakness.
○ Treatment: Currently, there is no cure for sickle cell anemia, but bone marrow transplantation can help improve symptoms.
④ Tay-Sachs disease: Autosomal recessive disease
○ Lipid metabolism disease caused by hexoseaminidase A deficiency.
○ It manifests in newborns and typically leads to death around the age of 3.
⑤ Phenylketonuria (PKU): Autosomal recessive diseases
○ Definition: A disorder where PAH (Phenylalanine Hydroxylase) cannot be synthesized.
○ PAH (Phenylalanine Hydroxylase): An enzyme that hydroxylates phenylalanine into tyrosine.
○ Tyrosine: Essential for the production of thyroxine, epinephrine, norepinephrine, and melanin.
○ Phenylalanine accumulates in the blood and is eventually excreted in the urine, producing dark-colored urine.
○ Converts to phenylpyruvic acid, causing acidosis, neural tube developmental disorders, intellectual disability, and pale skin.
○ Around 3 to 5 months of age, infants show indifference and do not respond to their environment.
○ By the age of 1, significant intellectual decline becomes noticeable: Even in adulthood, the IQ often remains below 50.
○ Diagnosis: Phenylpyruvic acid, a kind of phenylketone, in the urine are detected using ferric chloride, turning green (normal individuals show a brown color).
○ Treatment: If a newborn consumes a low-phenylalanine diet from early infancy, normal nervous system development can be achieved.
⑸ Polygenic inheritance: A single phenotype is influenced by two or more genes (loci), leading to quantitative traits.
① It is distinguished from multiple alleles inheritance in that it pertains to a single phenotype.
② Skin color, eye color: Multiple melanin-synthesizing enzymes (e.g., tyrosinase) + transport proteins → Melanin content
○ Melanin is a dark brown pigment made from tyrosine.
○ Tyrosinase deficiency leads to albinism.
③ At least three genes determine height.
○ When F1 offspring (AaBbCc) resulting from a cross between AABBCC × aabbcc are self-crossed, a normal distribution is observed.
○ Normal distribution: 6C0 : 6C1 : 6C2 : 6C3 : 6C4 : 6C5 : 6C6
④ cis AB type
○ When a mutation causes the A gene and the B gene to exist at different loci on the same chromosome.
○ O children can be born from AB parents.
⑹ Epistasis: When one gene influences or affects the phenotype of another gene.
① Fur color 9:3:4
○ Pigment gene and pigment precipitation gene are involved.
○ In the 9:3:3:1 ratio, the pigment deposition gene combines the 3 and 1 categories (i.e., recessive homozygous for that gene) into 4.
○ Tip. If 12:3:1, 9:6:1, 9:3:4, or 9:7 is observed in any experiment, it is the case of epistasis.
② Complementary genes: Non-allelic genes that work together to express a single trait.
③ Bombay O phenotype
○ H gene: A gene that attaches a fucose sugar to the surface of red blood cells to determine blood types.
○ When the H gene is recessive homozygous, an O blood type child can be born even in combinations where an O blood type child is not normally possible. In other words, the H gene locus is epistatic to the I gene locus.
○ H gene is on chromosome 19.
○ ABO allele is present on chromosome 9.
④ Double recessive gene: 9:3:3:1 becomes 15:1.
⑺ Recessive lethal: The condition often manifests at a young age.
① In the case of AB × AB, the offspring are AA, AB, BA, and BB, but if BB is lethal, only AA, AB, and BA are observed.
○ If A is dominant over B, the ratio of A trait to B trait is 1:0.
○ If A is recessive to B, the ratio of A trait to B trait is 1:2.
② Example: Cystic fibrosis, sickle cell anemia, albinism, Tay-Sachs disease, etc.
⑻ Dominant lethal: The condition often manifests later in life.
① Genotypes and traits
② Example: Huntingtons’ disease
○ It occurs at 30-40 years old, so it can be easily inherited.
○ A progressive incurable condition characterized by the death of brain nerve cells, cognitive decline, central nervous system disorders, and symptoms of chorea.
○ Died 10-20 years after onset of a physiological disorder.
○ HD gene on chromosome 4: Encodes a 3114 amino acid protein → Accumulates in the nuclei of brain cells, forming toxic protein aggregates, leading to neuronal death.
○ 5’-CAG repeat sequence: Promotes the detachment of RNA polymerase.
○ 5’-CAG repeated 9-36 times: Normal.
○ 5’-CAG repeated 37-66 times: Encodes polyQ (polyglutamine). Onset occurs at age 40 with 40 repeats.
○ 5’-CAG repeated 33-36 times: Premutation, with a high likelihood of expansion in offspring.
○ 5’-CAG repeated over 100 times: Onset at age 2.
○ Genetic anticipation: As generations progress, the number of repeats increases, leading to a higher likelihood of disease onset.
③ Incomplete dominant lethal: When heterozygotes do not result in death but exhibit severe or fatal symptoms, such as deformities.
○ Example: Achondroplasia
⑼ Genomic imprinting and extranuclear inheritance
① Genomic imprinting
○ Phenomenon where the expression of a trait differs depending on whether it is inherited from the mother or the father.
○ Occurs due to DNA methylation (methylation of C nucleotides): Influenced primarily by the methylation of CpG islands.
○ In all genes during gametogenesis, methylation is erased and re-established according to whether the gene comes from a paternal or maternal origin.
○ A male individual, who is heterozygous and carries a recessive trait due to maternal imprinting, may exhibit a dominant trait because of paternal imprinting.
○ Example: Igf-1 gene in mice
○ Example 1. Igf-1 gene in mice
○ Paternal imprinting: Methylation of the insulator → Activates transcription.
○ Maternal imprinting: Methylation of the promoter → Suppresses transcription.
○ Example 2. Prader-Willi syndrome and Angelman syndrome
○ Common feature: A recessive trait caused by the suppression of specific gene expression due to chromosomal deletion and genomic imprinting.
○ Prader-Willi syndrome (PWS)
○ Deletion of paternal chromosome 15
○ The non-deleted region of the maternal chromosome is imprinted through methylation, resulting in the suppression of the PWS gene.
○ Angelman syndrome (AS)
○ Deletion of maternal chromosome 15
○ Known as the “happy puppet syndrome” due to characteristic laughter and smiling.
○ The non-deleted region of the paternal chromosome is imprinted through methylation, resulting in the suppression of the AS gene.
② Maternal effect: Cytoplasmic determinants
○ Proteins required in the early stages of development are delivered as mRNA from the mother, as there is not enough time for transcription.
○ Regardless of the genotype of the germ cells, if the mother has at least one allele, the corresponding cytoplasmic determinant is delivered to the germ cells.
○ Genotype and phenotype must be considered separately.
○ Example: There are cases where individuals homozygous for a recessive lethal gene can survive but are unable to reproduce.
○ The mother’s genotype must be inferred from the offspring’s phenotype.
○ If all offspring exhibit the dominant trait, the mother’s genotype is dominant.
○ If all offspring exhibit the recessive trait, the mother’s genotype is recessive.
○ Examples: Early development in fruit flies, right-handed or left-handed coiling of snail shells, and inheritance of moth larva eye color.
③ Cytoplasmic inheritance
○ Plastid inheritance
○ Mitochondrial inheritance**: Maternal inheritance
○ Electron transport chain and ATP synthase are encoded by mitochondrial DNA.
○ Heteroplasmy: Due to the cooperation of mitochondria with numerous cellular organelles (mainly the nucleus), not all children of an affected mother inherit the disease.
○ Problem Type 1.: If mating with a mutant follows Mendelian inheritance → Abnormalities in nuclear DNA required for mitochondrial function.
○ Problem Type 2. If mating with a mutant follows maternal inheritance → Abnormalities in mitochondrial DNA.
○ Problem Type 3 Yeast: Mitochondria are inherited from both parents.
④ Sex-controlled inheritance: A gene is located on an autosome, but its expression (e.g., dominance relationship) varies depending on the sex of the individual.
○ Example 1: The gene for deer antlers exhibits dominant expression in males and recessive expression in females.
○ Example 2: The baldness gene encodes 5α-reductase, which converts testosterone into DHT (dihydrotestosterone). It shows dominant expression in males and recessive expression in females.
○ DHT is a substance that enhances male characteristics.
○ In females, instead of baldness, symptoms such as thinning of the hair occur.
⑤ Xenia: Paternal inheritance of endosperm traits.
5. Sex and sex-related
⑴ Determination of sex
① Sex determination by chromosomes
○ XY type: ♂ (XY), ♀ (XO) (e.g., human, fruit fly)
○ XO type: ♂ (XO), ♀ (XX)
○ ZW type: ♂ (ZZ), ♀ (ZW) (e.g., poultry)
○ ZO type: ♂ (ZZ), ♀ (ZO)
○ Haploid-diploid type (e.g., honeybees)
② Sex determination by environment
○ Example: The reptile’s sex is determined by the incubation temperature of the eggs.
③ Sex determination by fertilization
○ Example: Unfertilized honeybee eggs develop into males, while fertilized eggs develop into females.
④ Gender conversion
○ Example: Some fish change into males based on social signals, but only certain individuals undergo this transformation.
⑤ Hermaphrodite
○ Example: C. elegans has both male and female reproductive organs.
⑵ Sex-linked inheritance: Refers to genes located on sex chromosomes. If significant differences are observed in the results of reciprocal crosses, it indicates sex-linked inheritance.
① There are 18 genes common to both the X and Y chromosomes.
② Y chromosome-linked inheritance (sex-limited inheritance)
○ SRY (Sex-determining Region of the Y Chromosome)
○ The SRY gene determines sex.
○ Contains very few genes.
○ In fruit flies, the sex-determining factor is located on the X chromosome.
○ Ear hair in men
○ Striped patterns in female silkworms
W chromosome-linked inheritance
③ X chromosome-linked inheritance (sex-linked inheritance): Males express X-linked traits more frequently than females.
○ Color blindness: Green and Red Opsin Genes (X Chromosome)
○ Blue opsin gene (chromosome 7)
○ Duchenne muscular dystrophy (DMD)
○ X-chromosome recessive inheritance, incidence of 1 / 3,500 males
○ The most severe of the 10 muscular dystrophy: Induces muscle cell degeneration.
○ Uses a wheelchair during puberty.
○ Dies before reaching adulthood due to respiratory and heart complications.
○ DMD gene: 2.4 million bp, consisting of more than 70 exons, encoding dystrophin protein.
○ Dystrophin
○ A protein that links six proteins regulating calcium ion channels in the muscle cell membrane with the cytoskeleton.
○ Stabilizes the structure of muscle cells by connecting actin filaments to glycoproteins in the cell membrane.
○ The DMD gene is unable to regulate channels due to exon deletion.
○ Hemophilia
○ White eyes in fruit flies
○ Z chromosome-linked inheritance
④ Sex-controlled inheritance: Actually not sex-related.
⑤ X inactivation: Observed only in mammals
○ Defition: Females have two X chromosomes, so inactivating one of them for quantitative compensation.
○ Drosophila and C. Elegans double the expression of male X chromosomes for quantitative compensation.
○ Barr body: Inactivated X chromosome, cause of mosaic pattern (e.g., Cat fur color pattern)
○ Only in mammals.
○ Lyon hypothesis: Female early embryos randomly inactivate one X chromosome in each cell.
○ In animals, Barr bodies form either before or during cleavage, depending on the species.
○ Inactivation is irreversible, but it is reversed only during germ cell formation.
○ Once a Barr body is formed, all descendant cells produced through somatic cell division have the same region condensed (e.g., cancer cells).
○ Mechanism
○ 1st. Generation of Xist (X-inactive specific transcript) from Xist RNA on X chromosome with inactivation determined.
○ 2nd. X chromosome, determined to be activated, methylates Xist RNA to prevent inactivation mechanisms.
○ 3rd. RNA transcribed from the Xist binds to the corresponding X chromosome.
○ 4th. RNA interference blocks transcription entirely on the X chromosome that has been determined for inactivation.
○ 5th. Xist additionally attaches methyl groups to cytosine (C) and deacetylates histones to condense the chromosome → inhibit transcription.
⑥ Fragile X syndrome
○ A mutation occurs if the CGG repeat sequence exceeds 200.
○ Prior to that, it is sequentially classified as permutation, intermediate, and normal (less than 40 repeats).
6. Quantitative Genetics-Genetics and the Environment
⑴ Quantitative traits (e.g., height, weight) are continuous variation traits, influenced by both genetic differences and environmental factors.
① Genetic factors: Polygenic inheritance
○ Traits that have high inheritance indices are consistently expressed regardless of the environment.
② Environmental factors: Environmental dependence of genes, environmental dependence of traits
○ Example: Study of identical twins grown in different environments
⑵ Penetrance: The extent to which the expected traits of a particular genotype actually appear.
① Complete penetrance: 100% trait is expressed as predicted by genotype.
② Incomplete penetrance
③ Example: The dominant disorder, polydactyly, has an 80% penetrance.
⑶ Expressivity: The severity of the phenotype expressed in an individual.
⑷ Heritability (Inheritance index): The proportion of variation within a genetic population attributable to genetic factors.
① Calculation through correlation analysis between groups
○ Example: Parents and offspring have the same degree of immunity.
Figure 5. Heritability example
② 0.2 ~ 0.4: Genetic
③ 0.4 ~: Very genetic
④ Heredity is based on populations, not individual differences.
⑤ Even traits with high heritability can be influenced by the environment.
7. Genetic testing
⑴ Pedigree analysis
① Tip 1: Determining Dominance
○ If non-affected children are born from two affected parents: Dominant inheritance.
○ If affected children are born from two non-affected parents: Recessive inheritance.
② Tip 2: Determining Sex-Linkage
○ Tip 2-1: If the daughter of an affected father is always affected: Dominant X-linked inheritance.
○ Tip 2-2: If the son of an affected mother is always affected: Recessive X-linked inheritance.
○ Y chromosome-related disorders are rare due to the small number of genes on the Y chromosome.
○ If dominance is determined in ①, and Tip 2-1 and Tip 2-2 confirm that it is not X-linked, then it is autosomal inheritance.
③ Pedigree problems that deviate from these cases are unlikely to appear, as only solvable problems are presented.
⑵ Prenatal testing
① Amniocentesis: Performed around 14–16 weeks of pregnancy. Fetal cells are collected from the amniotic fluid for biochemical tests and karyotype analysis.
② Chorionic villus sampling: Performed around 6–8 weeks of pregnancy. Chorionic villi from the fetus are collected for biochemical tests and karyotype analysis.
⑶ Genetic fingerprinting test
Input: 2015.6.29 22:24