Korean, Edit

Chapter 7. Heredity and Genetics

Higher category: 【Biology】 Biology Index 


1. Genes and Chromosomes

2. Mendel Genetics

3. Linkage and Cross

4. Non-mendelian Genetics

5. Sex and sex-related

6. Quantitative Genetics

7. Genetic testing


a. Drosophila and Genetics

b. Difficult Problems on Genetics

c. Gene Library

d. Gene Score Library

e. Cell Type Marker Genes



1. Genes and Chromosomes

⑴ Genetics before Mendel

① Sperm inheritance

② Oocyte inheritance

③ Blending inheritance

④ Particle theory: Mendel insists on particle theory, followed by an official adoption.


drawing


Figure 1. Genetics before Mendel


⑵ Classical hypothesis about the relationship between genes and chromosomes

① Sutton’s Chromosome Theory: Genes are small particles in the chromosome.

② Morgan’s Chromosome: Allele is at the same locus on the gene.

⑶ Classical experiment that identified DNA as a genetic material

① Transformation experiment

○ Griffith experiment: R-type bacteria are transformed into S-type.

○ Avery experiment: Advances Griffith’s experiment and reveals that DNA is the material that causes transformation.

② Hershey and Chase Experiment

○ 1st. Bacteriophage are labeled with radioactive isotopes: 32P for DNA labeling, 35S for protein labeling.

○ 2nd. Infect the E. coli and culture it.

○ 3rd. Use a blender to separate the E. coli from the phages.

○ 4th. Use centrifugation to separate the nuclei and the rest.

○ Composition of DNA: C, H, O, N, P

○ Composition of proteins: C, H, O, N, S

○ Demonstrated that DNA is the genetic material using E. coli and T2 phages.

○ E. coli and T2 phages have significant size differences, making separation possible.

③ Additional evidence that DNA is genetic material

○ Chargaff’s rules: [A] = [T], [G] = [C] (proven by paper-chromatography)

○ The amount of DNA in all somatic cells of an individual is the same.

○ DNA amount fluctuates during cell division.

○ Highest mutation rate for light at 260 nm (DNA maximum absorption wavelength). No mutation at 280 nm.

⑷ Amount of DNA

① One chromosome consists of one DNA.

② One chromosome consists of 107 - 1010 bp.

③ Total amount of DNA consists of 3 × 109 bp.

⑸ Gene: DNA sequence that encodes a protein and is transcribed into mRNA.

① Full length of the human genome = 3 billion base pairs

② About 30,000 genes in the human genome. Total length of genes = 50 million base pair

③ 103 -106 bp for each gene

④ Allele: Different genes with different sequences at the same locus on DNA.

⑤ Siblings on average share about 50% of allele.

⑥ Reason: This is because the probability of a given gene matching either the paternal or maternal side is 50%.



2. Mendel Genetics

⑴ Genotypes and Phenotypes

① Character: Features that differ between individuals (e.g., Color).

② Allelic character: Characters that can be clearly contrasted with each other among traits (e.g., The shape is more clearly defined as round in contrast to wrinkled.)

③ Trait (phenotype): Type of character represented by an individual (e.g., Purple, Red)

○ Wild type (wt), mutant (mt), dominant trait, recessive trait

④ Genotype: Type of gene an individual has.

○ Homozygote: The case that both allele are the same (e.g., AA, BB, OO)

○ Heterozygote: The case that two alleles are different (e.g., AB, AO)

⑤ Recessive trait: Phenotypes of allele only in homozygotes (e.g., OO)

⑥ Dominant trait: Phenotypes that also appear in heterozygotes (e.g., AA, AO; BO, BB)

⑦ Carrier: Heterozygote for recessive disease

⑧ Mating

○ Unisexual mating (e.g., Aa), bisexual mating (e.g., AaBb)

○ Self-pollination (↔ Cross pollination): Breeding between individuals with the same genotype, often used for improving a breed.

○ Testcross: By mating an individual with a homozygous recessive individual, the genotype can be determined.

○ Reciprocal cross: Breeding a maternal line with the father’s genotype and a paternal line with the mother’s genotype. This can determine whether there is sex-linked inheritance.

○ p generation, F1 generation (hybrid first generation), F2 generation (hybrid second generation)

⑵ Mendel’s law

① Mendelian traits: Traits for which the pattern of inheritance can be easily determined, as in Mendel’s experiments.

② Plant hybrid research (1860s): Study on the inheritance of seven allelic traits in peas, with clear dominance and recessiveness.

○ Shell of peas: Round gray, Wrinkled white

○ An allele encodes an enzyme called SBE (starch branching enzyme), which is related to amylopectin.

○ Wrinkled peas have higher osmotic pressure: they become wrinkled when they absorb water and swell, then dry.

○ Color of peas: Yellow, Green

○ Color of flowers: White, Purple (Red)

○ Shape of pods: Smooth pods, Creased pods

○ Color of pods: Yellow, Green

○ The place where flowers bloom: Between the branches, or at the top.

○ Stem size: Big, Small

③ Advantages of peas

○ Peas have a short generation (3 months).

○ Pea leaves a lot of offspring.

○ Pea is easy to grow and easy to control reproduction.

○ Peas are capable of both self-fertilization and cross-fertilization.

○ Pea traits and dominance/recessiveness are very clear.

○ Although the alleles are linked and positioned far apart, they seem to adhere to the law of independence.

④ Highlights the design of experiments and the importance of mathematical thinking (statistics) of results.

○ Mendel conducts testcross to determine if an individual is true-breeding.

⑤ Mendel’s law

○ Several types of allele are used to determine traits.

The Law of Dominance: When pure lines with opposing traits are crossed, only one of the parent’s traits appears in the F1 generation.

○ This means that in a heterozygous individual, only one allele’s trait is expressed.

○ The trait that appears in heterozygotes is dominant, while the other is recessive.

○ This contrasts with the blending inheritance hypothesis.

The Law of Segregation: Since reproductive cells contain half the genetic material, only one of the two alleles is passed on.

○ An individual inherits only two alleles, one from each parent.

○ The forked line method can be applied.

The Law of Independence: Genes that are not in an allelic relationship are assumed to assort independently during gamete formation. Doesn’t consider linkage along the same chromosome.

○ A 9:3:3:1 ratio in the case of A_B_ : aaB_ : A_bb : aabb suggests independence.

⑶ Genotyping via Punnett square

① Example: Round yellow and wrinkled green


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Figure 2. How to draw a Punnett square in Mendel pea experiment


⑷ Pedigree Analysis


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Figure 3. Example of pedigree


⑸ Complementary Test (Cis-Trans Test)

① Definition: It is a test to determine whether certain genes related to a specific mutant trait are the same gene or different genes.

② Example: In the example below, there are a total of three mutant genes: Gene 1 (= Gene 3 = Gene 5), Gene 2, and Gene 4.


image

Figure 4. Example of complementary test


⑹ Hereditary diseases

① Achondroplasia



3. Linkage and Cross

⑴ Drosophila research

① Theoretical formulation of the linkage is made by studying fruit flies, starting with Morgan.

② Benefits of Drosophila as a Genetic Study

○ Readily available.

○ Breeding is easy and does not harm person.

○ Breeds a lot and breeds every 2 weeks.

○ Small number of chromosomes: 4 pairs of chromosomes.

⑵ Linkage

① Two or more non-alleles exist on the same chromosome and behave identically.

② Man has 23 linkage groups.

③ Cis-configuration and Trans-configuration

○ Cis-configuration (coupling): Individuals with AB and ab chromosomes

○ Trans-configuration (repulsion): Individuals with Ab and aB Chromosomes

○ When doing cross experiments, you should first determine whether you are based on cis-configuration or trans-configuration.

Case 1. Cis-configuration AaBb × Cis-configuration AaBb

○ The probability that the offspring have the same genotype as the parents is 1/2: (AB | ab) → (AB | ab)

○ There are 2 types of phenotypes in the offspring: A_B_, aabb

Case 2. Trans-configuration AaBb × Trans-configuration AaBb

○ The probability that the offspring have the same genotype as the parents is 1/2: (Ab | aB) → (Ab | aB)

○ There are 3 types of phenotypes in the offspring: A_B_, A_bb, aaB_

Case 3. Cis-configuration AaBb × Trans-configuration AaBb

○ There are 3 types of phenotypes in the offspring: A_B_, A_bb, aaB_

○ In Cases 1 to 3, A is dominant over a, and B is dominant over b.

Example problem

④ Complete linkage and incomplete linkage

○ Complete linkage: Linkage that produces only parent type. If two genes are very close and have fewer offspring.

○ In other words, when there is 100% genetic linkage.

○ A_B_ : aaB_ : A_bb : aabb = 3:0:0:1 means cis-configuration complete linkage.

○ A_B_ : aaB_ : A_bb : aabb = 2:1:1:0 means trans-configuration complete linkage.

○ Incomplete linkage: Produces both parental and recombinant (crossover) traits.

⑶ Crossover

① Exchange between sister chromatid segments occurs when bivalent chromosomes (tetrad) are formed during the prophase of the first meiotic division.

○ First-Division Segregation (FDS): When there is no crossing over

○ Second-Division Segregation (SDS): When there is crossing over

○ Chiasma: The location where crossing over occurs. The number of chiasmata is proportional to chromosome length.

② The recombination rate is proportional to the distance between two linked genes.

Formula 1: Crossover rate = (Number of gametes where crossing over occurs ÷ Total number of gametes) × 100

Formula 2: Crossover rate = (Number of offspring resulting from crossing over in a test cross ÷ Total number of offspring obtained in a test cross) × 100

⑤ Multiple crossovers: The probability of multiple crossovers is theoretically equal to the product of the probabilities of each individual single crossover.

○ 1-2 crossover events typically occur for each chromosomal pair in each gamete.

⑥ The crossover rate is a maximum of 50%: When the distance between two genes is very large, they satisfy the law of independence, and in the case of independence, the crossover rate is 50%.

⑦ Issues with calculating crossover rate

○ If an even number of crossovers occur between two linked genes, they do not contribute to the crossover rate.

○ Interference: One crossover event can inhibit (negative interference, most commonly) or promote (positive interference) another crossover event.

○ As the distance between two genes increases, the crossover rate becomes less accurate.

○ In most cases, an equal and equivalent amount of DNA is exchanged. However, unequal crossover can result in copy number variants (CNVs) as well as inversions and translocations.

○ Crossover is non-random; over 25,000 small regions of elevated recombination have been characterized as recombination hotspots.

⑷ Gene map

① A plot of the location of genes on a chromosome based on crossover rates obtained by three-point test crosses.

○ Test cross: A cross between an individual that is heterozygous for all genes and a homozygous recessive individual.

○ 1st. Group the 8 organisms into pairs.

○ 2nd. The majority of pairs will display the parental type.

○ 3rd. At least one pair of individuals contains the gene located in the middle on the map: Using the double crossover rate

○ 4th. Calculate the crossover rate between the intermediate gene and each of the other genes to estimate map distance of genes.

② 1 cM (centi-Morgan): A map distance where the crossover rate is 1%.

③ Double crossovers

○ For values below 25 cM, there is an almost proportional relationship between recombination frequency and map distance.

○ For values above 25 cM, the crossover rate appears lower compared to the map distance.

○ Reason: This is due to the occurrence of double crossovers. In each gamete, typically 1–2 crossovers occur per chromosome.

○ Application: The crossover rate between the two most distant genes is smaller than the sum of the distances between the respective intermediate genes.



4. Non-mendel Genetics

⑴ Co-dominance: Both alleles are expressed as phenotypes.

① MN blood type

② ABO blood type: IA and IB are co-dominant. i is recessive.


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Figure 5. ABO blood type inheritance


○ The gene encoding the glycoprotein on the surface of red blood cells located on chromosome 19.

○ AB type: IAIB

○ A type: IAIA or IAi

○ B type: IBIB or IBi

○ O type: ii

⑵ Incomplete dominance (intermediate inheritance)

① A complete phenotype is expressed only in homozygotes, while the phenotype of heterozygotes is intermediate.

② Quantitative inheritance: Usually pigments, receptors (e.g., Inheritance of hypercholesterolemia and LDL receptors)

③ Flower color of snapdragon: Rr × Rr

○ RR : Rr : rr = Red : Pink : White = 1:2:1

Tip: The inheritance of color is not a common dominant but an incomplete dominant.

⑶ Multiple allele inheritance: A case where more than three alleles exist at a single gene locus, often originating from mutations.

① The ABO blood type gene is determined by three alleles (multiple alleles).

⑷ Pleiotropy: The effect of a single allele influencing two or more phenotypes.

① Cystic fibrosis (CF): Recessive genetic disease

○ 1st. A defect in the CFTR gene on chromosome 7.

○ 2nd. Mutations occur in channels that transport chlorine ions out of epithelial cells.

○ 3rd. Excessive chloride ions are secreted, causing a significant amount of water to be released outside the epithelial cells.

○ Symptom: Accumulation of thick mucus, repeated lung infections, digestive problems, impaired liver function, shortened lifespan

○ Among white Americans, it occurs in approximately 1 in 2,500 individuals.

○ Pseudomonas aeruginosa lung infections are a major cause of death in CF patients.

② Hemophilia(factor Ⅶ): Excessive bleeding, bruising, joint pain and swelling, loss of vision, etc.

③ Sickle cell anemia

○ Definition: A disease caused by the substitution of the 6th amino acid in the β-chain of hemoglobin from glutamic acid (Glu, hydrophilic) to valine (Val, hydrophobic).

○ N terminal - Val - His - Leu - Thr - Pro - Glu/Val - Glu - ···

○ Types of hemoglobin variants: Approximately 500 Types

○ Most are caused by the substitution of a single amino acid in the globin polypeptide chain.

Example 1. HbS (sickle-cell Hb): Substitution of a single Glu with Val on the surface.

Example 2. Hb Cowtown: Removal of an ion pair involved in T-state stabilization.

Example 3. Hb Memphis: Substitution of a similar-sized residue on the surface with a polar but uncharged residue. Nearly a neutral mutation.

Example 4. Hb Bibba: Substitution of one Leu with Pro, affecting the α-helix.

Example 5. Hb Milwaukee: Substitution of one Val with Glu.

Example 6. Hb Providence: One Lysine (Lys) that normally sticks out at the center of the tetramer is replaced with Asparagine (Asn). This decreases BPG binding and increases oxygen saturation.

Example 7. Hb Philly: One Tyrosine (Tyr) is replaced with Phenylalanine (Phe), breaking a hydrogen bond at the α1β1 junction site. This increases BPG binding and decreases oxygen saturation.

○ Mechanism: When a hydrophilic amino acid is replaced with a hydrophobic amino acid, huge structural changes occur.

○ Clumping (fibrosis) of mutant hemoglobin: Due to hydrophobic interactions, hemoglobin molecules stick together and form fibers.

○ The formation of fibers is the reason why hemoglobin takes on a sickle shape.

○ The same genetic mutation is not observed in myoglobin: This is because myoglobin functions as a single monomer.

○ Trait based on genetic type

○ Dominant homozygous: Normal red blood cells.

○ Recessive homozygotes: Sickle-shaped red blood cells, significantly increased resistance to malaria (↑↑), but severely reduced oxygen transport efficiency (↓↓).

○ Heterozygotes: Some red blood cells are sickle-shaped, increased resistance to malaria (↑), and slightly reduced oxygen transport efficiency (↓).

○ Symptoms: Rheumatoid arthritis, atherosclerosis, dementia, weakened immunity, stroke, and heart weakness.

○ Treatment: Currently, there is no cure for sickle cell anemia, but bone marrow transplantation can help improve symptoms.

④ Tay-Sachs disease: Autosomal recessive disease

○ Lipid metabolism disease caused by hexoseaminidase A deficiency.

○ It manifests in newborns and typically leads to death around the age of 3.

⑤ Phenylketonuria (PKU): Autosomal recessive diseases

○ Definition: A disorder where PAH (Phenylalanine Hydroxylase) cannot be synthesized.

○ PAH (Phenylalanine Hydroxylase): An enzyme that hydroxylates phenylalanine into tyrosine.

○ Tyrosine: Essential for the production of thyroxine, epinephrine, norepinephrine, and melanin.

○ Phenylalanine accumulates in the blood and is eventually excreted in the urine, producing dark-colored urine.

○ Converts to phenylpyruvic acid, causing acidosis, neural tube developmental disorders, intellectual disability, and pale skin.

○ Around 3 to 5 months of age, infants show indifference and do not respond to their environment.

○ By the age of 1, significant intellectual decline becomes noticeable: Even in adulthood, the IQ often remains below 50.

○ Diagnosis: Phenylpyruvic acid, a kind of phenylketone, in the urine are detected using ferric chloride, turning green (normal individuals show a brown color).

○ Treatment: If a newborn consumes a low-phenylalanine diet from early infancy, normal nervous system development can be achieved.

⑸ Polygenic inheritance: A single phenotype is influenced by two or more genes (loci), leading to quantitative traits.

① It is distinguished from multiple alleles inheritance in that it pertains to a single phenotype.

② Skin color, eye color: Multiple melanin-synthesizing enzymes (e.g., tyrosinase) + transport proteins → Melanin content

○ Melanin is a dark brown pigment made from tyrosine.

○ Tyrosinase deficiency leads to albinism.

③ At least three genes determine height.

○ When F1 offspring (AaBbCc) resulting from a cross between AABBCC × aabbcc are self-crossed, a normal distribution is observed.

○ Normal distribution: 6C0 : 6C1 : 6C2 : 6C3 : 6C4 : 6C5 : 6C6

④ cis AB type

○ When a mutation causes the A gene and the B gene to exist at different loci on the same chromosome.

○ O children can be born from AB parents.

⑹ Epistasis: When one gene influences or affects the phenotype of another gene.

① Fur color 9:3:4

○ Pigment gene and pigment precipitation gene are involved.

○ In the 9:3:3:1 ratio, the pigment deposition gene combines the 3 and 1 categories (i.e., recessive homozygous for that gene) into 4.

Tip. If 12:3:1, 9:6:1, 9:3:4, or 9:7 is observed in any experiment, it is the case of epistasis.

② Complementary genes: Non-allelic genes that work together to express a single trait.

③ Bombay O phenotype

○ H gene: A gene that attaches a fucose sugar to the surface of red blood cells to determine blood types.

○ When the H gene is recessive homozygous, an O blood type child can be born even in combinations where an O blood type child is not normally possible. In other words, the H gene locus is epistatic to the I gene locus.

○ H gene is on chromosome 19.

○ ABO allele is present on chromosome 9.

④ Double recessive gene: 9:3:3:1 becomes 15:1.

⑺ Recessive lethal: The condition often manifests at a young age.

① In the case of AB × AB, the offspring are AA, AB, BA, and BB, but if BB is lethal, only AA, AB, and BA are observed.

○ If A is dominant over B, the ratio of A trait to B trait is 1:0.

○ If A is recessive to B, the ratio of A trait to B trait is 1:2.

② Example: Cystic fibrosis, sickle cell anemia, albinism, Tay-Sachs disease, etc.

⑻ Dominant lethal: The condition often manifests later in life.

① Genotypes and traits

② Example: Huntingtons’ disease

○ It occurs at 30-40 years old, so it can be easily inherited.

○ A progressive incurable condition characterized by the death of brain nerve cells, cognitive decline, central nervous system disorders, and symptoms of chorea.

○ Died 10-20 years after onset of a physiological disorder.

○ HD gene on chromosome 4: Encodes a 3114 amino acid protein → Accumulates in the nuclei of brain cells, forming toxic protein aggregates, leading to neuronal death.

○ 5’-CAG repeat sequence: Promotes the detachment of RNA polymerase.

○ 5’-CAG repeated 9-36 times: Normal.

○ 5’-CAG repeated 37-66 times: Encodes polyQ (polyglutamine). Onset occurs at age 40 with 40 repeats.

○ 5’-CAG repeated 33-36 times: Premutation, with a high likelihood of expansion in offspring.

○ 5’-CAG repeated over 100 times: Onset at age 2.

○ Genetic anticipation: As generations progress, the number of repeats increases, leading to a higher likelihood of disease onset.

③ Incomplete dominant lethal: When heterozygotes do not result in death but exhibit severe or fatal symptoms, such as deformities.

○ Example: Achondroplasia

⑼ Genomic imprinting and extranuclear inheritance

① Genomic imprinting

○ Phenomenon where the expression of a trait differs depending on whether it is inherited from the mother or the father.

○ Occurs due to DNA methylation (methylation of C nucleotides): Influenced primarily by the methylation of CpG islands.

○ In all genes during gametogenesis, methylation is erased and re-established according to whether the gene comes from a paternal or maternal origin.

○ A male individual, who is heterozygous and carries a recessive trait due to maternal imprinting, may exhibit a dominant trait because of paternal imprinting.

○ Example: Igf-1 gene in mice

Example 1. Igf-1 gene in mice

○ Paternal imprinting: Methylation of the insulator → Activates transcription.

○ Maternal imprinting: Methylation of the promoter → Suppresses transcription.

Example 2. Prader-Willi syndrome and Angelman syndrome

○ Common feature: A recessive trait caused by the suppression of specific gene expression due to chromosomal deletion and genomic imprinting.

○ Prader-Willi syndrome (PWS)

○ Deletion of paternal chromosome 15

○ The non-deleted region of the maternal chromosome is imprinted through methylation, resulting in the suppression of the PWS gene.

○ Angelman syndrome (AS)

○ Deletion of maternal chromosome 15

○ Known as the “happy puppet syndrome” due to characteristic laughter and smiling.

○ The non-deleted region of the paternal chromosome is imprinted through methylation, resulting in the suppression of the AS gene.

② Maternal effect: Cytoplasmic determinants

○ Proteins required in the early stages of development are delivered as mRNA from the mother, as there is not enough time for transcription.

○ Regardless of the genotype of the germ cells, if the mother has at least one allele, the corresponding cytoplasmic determinant is delivered to the germ cells.

○ Genotype and phenotype must be considered separately.

○ Example: There are cases where individuals homozygous for a recessive lethal gene can survive but are unable to reproduce.

○ The mother’s genotype must be inferred from the offspring’s phenotype.

○ If all offspring exhibit the dominant trait, the mother’s genotype is dominant.

○ If all offspring exhibit the recessive trait, the mother’s genotype is recessive.

○ Examples: Early development in fruit flies, right-handed or left-handed coiling of snail shells, and inheritance of moth larva eye color.

③ Cytoplasmic inheritance

○ Plastid inheritance

○ Mitochondrial inheritance**: Maternal inheritance

○ Electron transport chain and ATP synthase are encoded by mitochondrial DNA.

○ Heteroplasmy: Due to the cooperation of mitochondria with numerous cellular organelles (mainly the nucleus), not all children of an affected mother inherit the disease.

Problem Type 1.: If mating with a mutant follows Mendelian inheritance → Abnormalities in nuclear DNA required for mitochondrial function.

Problem Type 2. If mating with a mutant follows maternal inheritance → Abnormalities in mitochondrial DNA.

Problem Type 3 Yeast: Mitochondria are inherited from both parents.

④ Sex-controlled inheritance: A gene is located on an autosome, but its expression (e.g., dominance relationship) varies depending on the sex of the individual.

Example 1: The gene for deer antlers exhibits dominant expression in males and recessive expression in females.

Example 2: The baldness gene encodes 5α-reductase, which converts testosterone into DHT (dihydrotestosterone). It shows dominant expression in males and recessive expression in females.

○ DHT is a substance that enhances male characteristics.

○ In females, instead of baldness, symptoms such as thinning of the hair occur.

⑤ Xenia: Paternal inheritance of endosperm traits.



⑴ Determination of sex

① Sex determination by chromosomes

○ XY type: ♂ (XY), ♀ (XO) (e.g., human, fruit fly)

○ XO type: ♂ (XO), ♀ (XX)

○ ZW type: ♂ (ZZ), ♀ (ZW) (e.g., poultry)

○ ZO type: ♂ (ZZ), ♀ (ZO)

○ Haploid-diploid type (e.g., honeybees)

② Sex determination by environment

○ Example: The reptile’s sex is determined by the incubation temperature of the eggs.

③ Sex determination by fertilization

○ Example: Unfertilized honeybee eggs develop into males, while fertilized eggs develop into females.

④ Gender conversion

○ Example: Some fish change into males based on social signals, but only certain individuals undergo this transformation.

⑤ Hermaphrodite

○ Example: C. elegans has both male and female reproductive organs.

⑵ Sex-linked inheritance: Refers to genes located on sex chromosomes. If significant differences are observed in the results of reciprocal crosses, it indicates sex-linked inheritance.

① There are 18 genes common to both the X and Y chromosomes.

② Y chromosome-linked inheritance (sex-limited inheritance)

○ SRY (Sex-determining Region of the Y Chromosome)

○ The SRY gene determines sex.

○ Contains very few genes.

○ In fruit flies, the sex-determining factor is located on the X chromosome.

○ Ear hair in men

○ Striped patterns in female silkworms

W chromosome-linked inheritance

③ X chromosome-linked inheritance (sex-linked inheritance): Males express X-linked traits more frequently than females.

○ Color blindness: Green and Red Opsin Genes (X Chromosome)

○ Blue opsin gene (chromosome 7)

○ Duchenne muscular dystrophy (DMD)

○ X-chromosome recessive inheritance, incidence of 1 / 3,500 males

○ The most severe of the 10 muscular dystrophy: Induces muscle cell degeneration.

○ Uses a wheelchair during puberty.

○ Dies before reaching adulthood due to respiratory and heart complications.

○ DMD gene: 2.4 million bp, consisting of more than 70 exons, encoding dystrophin protein.

○ Dystrophin

○ A protein that links six proteins regulating calcium ion channels in the muscle cell membrane with the cytoskeleton.

○ Stabilizes the structure of muscle cells by connecting actin filaments to glycoproteins in the cell membrane.

○ The DMD gene is unable to regulate channels due to exon deletion.

○ Hemophilia

○ White eyes in fruit flies

○ Z chromosome-linked inheritance

④ Sex-controlled inheritance: Actually not sex-related.

⑤ X inactivation: Observed only in mammals

○ Defition: Females have two X chromosomes, so inactivating one of them for quantitative compensation.

○ Drosophila and C. Elegans double the expression of male X chromosomes for quantitative compensation.

○ Barr body: Inactivated X chromosome, cause of mosaic pattern (e.g., Cat fur color pattern)

○ Only in mammals.

○ Lyon hypothesis: Female early embryos randomly inactivate one X chromosome in each cell.

○ In animals, Barr bodies form either before or during cleavage, depending on the species.

○ Inactivation is irreversible, but it is reversed only during germ cell formation.

○ Once a Barr body is formed, all descendant cells produced through somatic cell division have the same region condensed (e.g., cancer cells).

○ Mechanism

○ 1st. Generation of Xist (X-inactive specific transcript) from Xist RNA on X chromosome with inactivation determined.

○ 2nd. X chromosome, determined to be activated, methylates Xist RNA to prevent inactivation mechanisms.

○ 3rd. RNA transcribed from the Xist binds to the corresponding X chromosome.

○ 4th. RNA interference blocks transcription entirely on the X chromosome that has been determined for inactivation.

○ 5th. Xist additionally attaches methyl groups to cytosine (C) and deacetylates histones to condense the chromosome → inhibit transcription.

⑥ Fragile X syndrome

○ A mutation occurs if the CGG repeat sequence exceeds 200.

○ Prior to that, it is sequentially classified as permutation, intermediate, and normal (less than 40 repeats).



6. Quantitative Genetics-Genetics and the Environment

⑴ Quantitative traits (e.g., height, weight) are continuous variation traits, influenced by both genetic differences and environmental factors.

① Genetic factors: Polygenic inheritance

○ Traits that have high inheritance indices are consistently expressed regardless of the environment.

② Environmental factors: Environmental dependence of genes, environmental dependence of traits

○ Example: Study of identical twins grown in different environments

⑵ Penetrance: The extent to which the expected traits of a particular genotype actually appear.

① Complete penetrance: 100% trait is expressed as predicted by genotype.

② Incomplete penetrance

③ Example: The dominant disorder, polydactyly, has an 80% penetrance.

⑶ Expressivity: The severity of the phenotype expressed in an individual.

⑷ Heritability (Inheritance index): The proportion of variation within a genetic population attributable to genetic factors.

① Calculation through correlation analysis between groups

○ Example: Parents and offspring have the same degree of immunity.


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Figure 5. Heritability example


② 0.2 ~ 0.4: Genetic

③ 0.4 ~: Very genetic

④ Heredity is based on populations, not individual differences.

⑤ Even traits with high heritability can be influenced by the environment.



7. Genetic testing

⑴ Pedigree analysis

Tip 1: Determining Dominance

○ If non-affected children are born from two affected parents: Dominant inheritance.

○ If affected children are born from two non-affected parents: Recessive inheritance.

Tip 2: Determining Sex-Linkage

Tip 2-1: If the daughter of an affected father is always affected: Dominant X-linked inheritance.

Tip 2-2: If the son of an affected mother is always affected: Recessive X-linked inheritance.

○ Y chromosome-related disorders are rare due to the small number of genes on the Y chromosome.

○ If dominance is determined in ①, and Tip 2-1 and Tip 2-2 confirm that it is not X-linked, then it is autosomal inheritance.

③ Pedigree problems that deviate from these cases are unlikely to appear, as only solvable problems are presented.

⑵ Prenatal testing

① Amniocentesis: Performed around 14–16 weeks of pregnancy. Fetal cells are collected from the amniotic fluid for biochemical tests and karyotype analysis.

② Chorionic villus sampling: Performed around 6–8 weeks of pregnancy. Chorionic villi from the fetus are collected for biochemical tests and karyotype analysis.

⑶ Genetic fingerprinting test



Input: 2015.6.29 22:24

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