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Chapter 36. Ecology

Recommended Articles: 【Biology】 Biology Table of Contents


1. Population

2. Community

3. Ecosystem


a. Environmental Microbiology



1. Population

Population: All individuals of a species living in a particular area.

⑵ Density fluctuations in populations

① Factors of increase: High birth rate, immigration

② Factors of decrease: High death rate, emigration

⑶ Survival of populations

① Human survivorship type (Type I): High death rate in old age

② Hydra survivorship curve (Type II)

③ Oyster survivorship curve (Type III): High death rate in youth

⑷ Population Structure

① Population structure: characteristics of density (abundance) and spatial distribution (dispersion)

② Measuring population size: census, mark–recapture, quadrat method, line-transect method, belt-transect method, etc.

○ Quadrat method: place a quadrat frame over the study area and count individuals within it.


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Figure 1. Quadrat method


○ Density = number of individuals ÷ total area; A = 10/25, B = 4/25, C = 6/25

○ Relative density = number of individuals ÷ total number of individuals; A = 10/20, B = 4/20, C = 6/20

○ Frequency = number of quadrats in which the species occurs ÷ total number of quadrats; A = 6/25, B = 4/25, C = 6/25

○ Cover = area occupied by a species ÷ total area

○ Importance = sum of relative density, relative frequency, and relative cover

○ Species richness

○ Species diversity

○ Dominant species: the species with the greatest importance; i.e., a species with high biomass or many individuals that exerts major effects on the community

○ Keystone species: a species whose extinction would have the greatest impact on the ecosystem; i.e., one with relatively few individuals but a large ecological effect

○ Indicator species: a species found only (or characteristically) in a particular community

○ Rare species: a species with few individuals within the community

○ Foundation species: a species whose predator’s removal can lead to the disappearance of other species

○ Pioneer species: a species that creates or modifies habitat conditions in a new site (e.g., beavers)

③ Spatial distributions of populations

○ Clumped (aggregated) distribution: high density where resources are abundant

○ Uniform (regular) distribution: associated with territorial behavior

○ Random distribution: seen in nonsocial species with broad environmental tolerance; no specific drivers of pattern

④ Allee effect: the principle that populations have an optimal density

○ Very low densities can reduce growth or survival.

○ Relatedly, population size is proportional to habitat area.

⑸ Exponential Growth Model

① Growth rate (r): the percentage change in the size of a population over one year

○ r = birth rate − death rate

○ Birth and death rates are constants: the numbers of births and deaths are assumed to increase in proportion to population size.

② Population size (S) = S0(1 + r)n

○ S0: initial population size

○ n: number of years elapsed since the reference year

Limitation 1. Excessive population growth leads to high mortality: risk of extinction is high.

○ Density-dependent factors: resource shortages, increased disease, increased pollutants

○ Density-independent factors: events such as drought, extreme temperatures, and natural disasters

Limitation 2. There is a time lag between individual birth and reproduction → environmental effects do not appear immediately.

○ Demographic inertia: the time lag between when the birth rate declines and when population growth begins to decrease

⑹ Logistic Growth Model: addresses Limitation 1

① Assumes that the per-unit-time population growth rate is affected by population size and environmental resistance.

○ Carrying capacity (K): the maximum population the environment can support

○ Environmental resistance: for population size N, corresponds to 1 − K/N

○ ∴ dN/dt = rN(1 − N/K)

② r-selection: high population growth rate; small body size; many offspring; short generation time

○ Environmental resistance is close to zero, so growth roughly follows a J-shaped exponential model: density-independent growth

○ Features of the J shape: reproduction-oriented; short lifespan; small body size

③ K-selection: low population growth rate; large body size; few but high-quality offspring

○ As the population approaches carrying capacity, the growth rate nears zero.

○ Long lifespan and large body size; repeated reproduction; long developmental time; intense competition among individuals

○ K-selected organisms tend to reproduce at older ages; they have fewer offspring and populations are smaller.


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Figure 2. Population growth models

(가): Exponential growth model, (나): Logistic Growth Model


⑺ Demographic transition: when the birth rate remains unchanged but the death rate declines, the growth rate increases

① Before the Industrial Revolution: most countries had both high birth and high death rates.

② After the Industrial Revolution: improved sanitation and advances in medicine reduced death rates.

③ The time lag between death rates and birth rates has a major impact on population size.

④ Many developing countries are in the demographic transition phase → implementation of family-planning policies.

⑤ Developed countries have passed through the transition and have low population growth rates → childcare/education welfare and immigration policies.


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Figure 3. Demographic transition



2. Community

⑴ Community: the assemblage of all living populations inhabiting a given area.

⑵ Food web: the network of who-eats-whom relationships.

① Ecological niche (niche): the role an organism occupies in an ecosystem—the sum of the biotic and abiotic resources it uses.

○ Influenced by habitat and by diet/feeding mode.

○ A species’ fundamental niche and realized niche can differ depending on environmental conditions.

② Species within a community occupy unique ecological niches and interact with one another.

○ Ecotype: distinct forms that arise when the same species adapts to different environments.

③ Interactions in a community

Interaction 1. Mutualism (+/+): both interacting species benefit.

Examples: bees and flowering plants; large fishes and cleaner fish; ants and acacia trees.

Example: root-nodule bacteria in legumes.

Example: nutrient exchange between fungi and plant roots in mycorrhizae.

Interaction 2. Commensalism (+/0): only one species benefits, the other is unaffected.

Interaction 3. Predation (+/−): a predator consumes a prey organism.

Example: plant → insect → bird.

○ Lotka–Volterra model: when predator–prey relations are simple, population sizes oscillate.


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Figure. 4. Lotka-Volterra model

○ Mathematical formulation: for ni (population size of the i-th population), ri (weight), and Ai←j (interaction coefficient representing how the j-th population affects the i-th population), dni/dt = ni ( ri + Σj Ai←j nj).

Interaction 4. Parasitism (+/−): a relationship in which a parasite obtains nutrients from its host.

○ Endoparasites: tapeworms, malaria, etc.

○ Ectoparasites: ticks, etc.

Interaction 5. Amensalism (0/−): a relationship in which only one species is harmed.

Interaction 6. Competition (−/−): competing for the same resources.

Example: mosquitoes, snails, and tadpoles compete for pond resources.

Supplement 1. Competitive Exclusion Principle

○ Two populations compete for limited resources; if the competition intensifies, competitive exclusion may occur.

○ Competitive exclusion: one species monopolizes food and space resources so that another species cannot establish.

Example: a strategy to prevent S. enteritidis from colonizing the chick’s intestine.

○ Chicks hatch with intestines essentially free of bacteria.

○ Untreated: few or no bacteria in the gut → S. enteritidis infection proceeds actively.

○ Ingestion of beneficial bacteria: large colonies of beneficial bacteria form on the inner intestinal surface.

○ Expose to Salmonella enteritidis.

○ Untreated: S. enteritidis infection proceeds actively.

○ Ingestion of beneficial bacteria: S. enteritidis fails to find space to form colonies and is excreted.

Supplement 2. Mimicry

○ Batesian mimicry: a palatable, harmless species imitates an unpalatable, harmful model.

○ Müllerian mimicry: two or more unpalatable species resemble each other, prompting predators to avoid all of them.

Supplement 3. Hamilton’s Rule

○ B: the benefit to the recipient, i.e., the expected number of offspring if the recipient survives.

○ C: the cost to the altruist, i.e., the reduction in offspring due to death (or other costs) from the altruistic act.

○ r: the coefficient of relatedness between individuals, i.e., the probability of sharing a particular allele.

○ Altruism is favored when B × r > C.

Supplement 4. Edge Effect

○ The edges of available habitat patches exhibit characteristics different from the interior.

Trait 1: at edges, the frequency of competition with adjacent habitats increases.

Trait 2: if the habitat is forest, wind exposure increases, temperature rises, humidity decreases, and light intensity increases.

○ As a result, edge species and species from adjacent habitats are favored over interior specialists.

Supplement 5. Habitat Fragmentation

○ Definition: through human activities and other causes, habitats are progressively destroyed so that the remaining habitats become smaller and more isolated.

Outcome 1: only populations able to live in small habitats can persist.

Outcome 2: edge effects increase.

④ Roles within a community: producers, consumers (predators), decomposers

○ Producers: raise the energy level of the community; green plants that synthesize organic matter from inorganic substances.

○ Consumers: lower the energy level of the community; animals that obtain energy by consuming organic matter.

○ Decomposers: lower the energy level of the community; organisms that live by decomposing the carcasses and excreta of plants and animals, primarily microorganisms.

⑤ Keystone species: species that play a pivotal role in structuring the food web.

Example: sea stars feed on mussels; without the keystone sea star, mussel populations explode and disrupt the ecosystem.

⑥ Ecosystem energy flow: only ~10% at each trophic level is converted into biomass at the next level.

○ The amount of solar energy and the availability of water are key drivers of energy flow.

○ Biodiversity also influences energy flow.

Example: grasslands generate large amounts of biomass.

⑶ Nutrient Cycling: Recycling of inorganic nutrients through the food web

① Nutrient Efficiency: The ratio of energy transferred from one trophic level to the next, typically around 10%.

② Nitrogen Cycling


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Figure 5. Nitrogen Cycling


○ Nitrogen Fixation and Others: Atmospheric nitrogen (N2) → Ammonia (NH3) → Ammonium (NH4+)

Case 1: High-energy fixation (lightning, meteorite)

Case 2: Nitrogen fixation (anaerobic conditions): Soil bacteria, rhizobia, azotobacter, cyanobacteria

Case 3: Nitrogen from corpses or waste products

○ Nitrification Process: Ammonium (NH4+) → Nitrite (NO2-) → Nitrate (NO3-)

○ Nitrosomonas: Ammonium (NH4+) → Nitrite (NO2-)

○ Nitrobacter: Nitrite (NO2-) → Nitrate (NO3-)

○ Chemical synthesis: Nitrosomonas and Nitrobacter synthesize sugar using energy released during oxidation of organic matter.

○ Denitrification Process: Nitrate (NO3-) → Nitrogen gas (N2)

○ Denitrifying bacteria: Nitrate (NO3-) → Nitrogen gas (N2). Anaerobic heterotrophs. In the respiratory electron transport chain, they use nitrite and nitrate as terminal electron acceptors instead of oxygen.

○ Plants can use either Ammonium (NH4+) or Nitrate (NO3-).

③ When phytoplankton increase, decomposers consume more oxygen to break down their dead biomass, leading to deterioration of water quality.

⑷ Extinction

① Extinction: when a species disappears completely.

② Measuring extinction rates

○ Extinction rate: the percentage of all species that go extinct in a given year.

○ Background extinction rate: the rate at which species disappear through normal evolutionary processes; 0.0001% per year.

○ Current extinction rate: 0.0037% per year, clearly suggesting the involvement of human activities.

Cause 1. Habitat destruction

○ Population growth increases pressure on natural areas.

○ Species–area curve: the number of species a natural area can support.

Cause 2. Habitat fragmentation

○ 1st. Reduces the area available to producers in the food chain.

○ 2nd. Top consumers need many calories and large home ranges, increasing environmental pressure.

○ 3rd. Decline in the population size of top consumers.

○ 4th. Inbreeding among top consumers accelerates extinction.

Cause 3. Invasive species

○ Invasive (non-native) species: species newly introduced through human activities.

○ Because they did not coevolve with local species, they often lack natural enemies and are destructive.

Examples: bluegill, American bullfrog, red-eared slider.

Cause 4. Overharvesting: using natural resources at a rate exceeding their reproductive capacity.

Cause 5. Pollution

○ Herbicides: threaten frogs and salamanders.

○ Use of agricultural fertilizers → eutrophication of waterways leading to algal overgrowth → oxygen depletion → mass fish die-offs.

○ Carbon dioxide: an air pollutant associated with climate change.

Cause 6. Inbreeding: the Great Irish Potato Famine (1847–1852) is a representative case.

○ At the time, the ‘Lumper’ variety, a South American import, was cultivated.

○ Extinction mechanism: positive feedback.

○ 1st. Small populations → inbreeding, genetic drift.

○ 2nd. Inbreeding and genetic drift → loss of genetic variation.

○ 3rd. Loss of genetic variation → reduced fitness and population adaptability.

○ 4th. Reduced fitness and adaptability → high mortality, low reproduction.

○ 5th. High mortality and low reproduction → even smaller populations.

○ Potato famine mechanism

○ 1st. Potatoes were propagated asexually → genetic diversity = 0.

○ 2nd. The late blight fungus arrived and potatoes rotted in the fields.

○ 3rd. Collapse (extinction) of the potato crop.

○ 4th. Of 9 million people, 1.5 million died and 1 million emigrated to North America.



3. Ecosystem

⑴ Ecosystems and Biomes

① Ecosystem: Abiotic environmental factors (light, temperature, water, air, soil) + biotic environmental factors.

② Biome: A typical ecosystem spread over a broad region.

○ A biome is a wide geographic area characterized by the dominant form(s) of vegetation.

③ Energy in ecosystems

○ Gross primary production (GPP): The total amount of organic matter produced by producers via photosynthesis; i.e., GPP = respiration + net primary production.

○ Net primary production (NPP): GPP minus the respiration of photosynthetic organisms.

○ NPP can be subdivided into biomass consumed by herbivores, plant mortality, leaf-litter (litterfall), and growth increment.

○ Ingestion by primary consumers: equal to the amount of producer biomass consumed.

○ The fate of primary consumers’ ingestion can be subdivided into respiration, excretion, carcass (mortality), and growth, etc.

○ Net community production (NCP): NPP minus heterotrophs’ respiration.

○ Production efficiency = growth ÷ ingestion.

○ Homeotherms (endotherms) have low production efficiency because much energy is used to maintain body temperature.

④ Trophic (ecological) pyramids

○ Pyramid of numbers: diagrams the number of individuals at each trophic level.

○ Pyramid of biomass: graphs biomass (dry mass); clearly reflects the food chain.

○ Pyramid of energy: shows energy flow and losses between trophic levels.

④ Ecosystem development (plant succession)

Stage 1. Succession: Changes in plant communities over time at the same site.

Stage 1-1. Primary succession: Succession starting where no plant community previously existed; lichens become the dominant species.

Stage 1-2. Secondary succession: Succession beginning after disturbance (e.g., wildfire) where soil nutrients and some community remnants remain; herbaceous plants become dominant.

Stage 2. Herbaceous plants → shrubs → trees.

Stage 3. Light-demanding forest: shade-intolerant species appear.  

○ Definition: plants adapted to strong light.

○ Traits: high light-compensation point and high light-saturation point.

Example: pines.

Stage 4. Shade-tolerant forest: shade-adapted species appear.

○ Definition: plants adapted to weak light.

○ Traits: low light-compensation point and low light-saturation point.

Example: oaks.

Stage 5. Extreme: the final stage of ecosystem development.

○ Shade-intolerant species appear first, followed by shade-adapted species.

○ Species diversity increases in early stages and then decreases again later.

⑵ Terrestrial biomes: determined by vegetation types—forests, grasslands, deserts, and tundra

① Vegetation: plant cover that blankets the Earth’s surface; “climate → vegetation” (∴ depends on altitude and latitude)

② Forests: plant communities dominated by woody plants; cover ~1/3 of the land surface and hold ~70% of Earth’s biomass

②―① Tropical forest: intense solar radiation; 25–29 °C year-round; abundant rainfall (≥2,500 mm); equatorial to sub-equatorial zones

○ Very high biodiversity—e.g., up to 750 woody species per hectare → provides habitat for diverse organisms.

○ Rapid decomposition of organic matter and rapid re-uptake of nutrients by plants → low soil organic matter

○ Most mineral nutrients are locked in the vegetation; without heavy fertilization, soils are poor for agriculture.

○ Slash-and-burn fields last only 4–5 years; recovery takes decades.

○ Tropical communities are older than most other biotic communities → much longer periods for speciation → higher species diversity

○ In general, the greater the evaporation, the higher the species diversity.

②―② Temperate deciduous forest: ample water (750–2,500 mm) and light during the growing season but not in winter; ~23°–50° N/S

○ Dominant life form: broad-leaved trees

○ Typical succession: weeds → shrubs → broad-leaved trees → broad-leaved trees + shade plants

○ Regions: mid-latitudes of the Northern Hemisphere; Australia

○ Deciduous habit evolved to conserve water; as chlorophyll degrades, accessory pigments (e.g., tannins, anthocyanins, carotenoids, etc.) previously masked by sugars and chlorophyll produce autumn colors.

○ Shade-tolerant plants grow and flower rapidly during periods when light reaches the forest floor.

②―③ Coniferous (boreal/taiga) forest: winters to −50 °C, summers to ~20 °C; 300–700 mm precipitation; near the sub-polar zones (North America, Asia, Northern Europe)

○ Dominant taxa: pines and other conifers (e.g., Pinus, Abies)

○ The largest terrestrial biome on Earth.

○ Adapted to long, cold winters and humid summers.

○ Evergreen habit evolved: photosynthesis halts when tissues are frozen in winter; once thawed, existing chlorophyll allows photosynthesis to resume immediately.

②―④ Mediterranean-type shrubland (chaparral): spring 10–12 °C, summer ~30 °C; 300–500 mm annually (dry summers); found in the Mediterranean Basin, southern California, and southwestern Australia

○ Dominant life form: evergreen shrubs (e.g., olive, fig)

○ Long, dry summers and frequent fires → fire adaptations (e.g., seeds germinate after exposure to high heat.)

Example: Mediterranean area has hot, dry summers; has cool, wet winters.

③ Grasslands: 250–500 mm precipitation; 8–9-month dry season; dominated by herbaceous plants.

Example 1. Savanna: equatorial to sub-equatorial; tropical grassland

○ Warm throughout the year.

Example 2. Prairie: temperate grassland (e.g., South African veld, the Hungarian Puszta, the Pampas, central North American prairies)

○ Mean winter temperature below −10 °C; mean summer temperature ~30 °C

○ Dominant growth form: grasses with basal meristems that regrow after grazing.

○ Periodic fires in the dry season; vegetation recovers during the rainy season.

④ Deserts: mean 24–29 °C; <250 mm annual precipitation; commonly around ~30° N/S

○ Large diurnal temperature range: −30 to 50 °C

○ Habitat for annuals that complete their life cycle within 2–3 weeks during brief rainy periods.

○ Plant adaptations: waxy coatings, spines, water storage in columnar stems; adaptations to frequent fire

○ Animal adaptations (e.g., kangaroo rats): nocturnal and minimize water loss.

Example: kangaroo rats are active only at night and survive on water contained in seeds plus metabolic water from breaking down seed fats.

⑤ Tundra: winters below −30 °C; short summers with temperatures ≤10 °C

Examples: northern Norway; northern Canada

○ Plant growing season: ~50–60 days (about two months) in summer

○ Permafrost: frozen soil impedes drainage and restricts plant growth.

○ Strong winds and low temperatures favor prostrate (ground-hugging) growth forms.

○ Effect of global warming: some tundra areas are transitioning to coniferous forest.

○ Animal adaptations: fat storage, insulating fur/feathers, hibernation, migratory behavior


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Figure 6. Terrestrial Ecosystems


⑶ Aquatic biomes (aquatic systems)

① Freshwater: salinity ≤ 0.1%

①―① Lakes and ponds (freshwater): bodies of water surrounded by land

○ May dry up seasonally and serve as key habitats for frogs and salamanders.

○ Seasonal changes in wind and temperature drive nutrient cycling in lakes and ponds.

○ Eutrophication from fertilizers applied to nearby farmland and lawns causes algal blooms.

①―② Rivers and streams (freshwater): one-directional flowing watercourses

○ Headwaters: cold, clear, fast-flowing

○ Mid-reaches: warmer; algal growth increases, providing food for a wider array of animals.

○ Lower reaches: flow slowly toward the sea with high sediment loads; low light penetration reduces photosynthesis; decomposers increase; dissolved oxygen declines; benthic deposit-feeding animals increase.

①―③ Wetlands (freshwater): standing-water areas where aquatic plants grow

○ Difference from lakes/ponds: soils surrounding wetlands are also highly water-saturated.

○ As species-rich as tropical rainforests.

○ Functions: slow water flow to moderate flooding; filter toxic substances and sediments from water.

○ In the United States, more than 50% of wetlands have been lost or degraded.

② Marine: ~75% of Earth’s surface

②―① Oceans (marine): ~two-thirds of Earth’s surface; salinity ~3.4–3.5%

Example 1. Intertidal zone: water ebbs and floods with the tides; nutrient-rich.

Example 2. Abyssal plain: low temperatures, high pressure; unique biota at hydrothermal vents.

○ Among the least well-known biomes.

○ About 50% of atmospheric oxygen is produced by photosynthetic algae in the oceans.

○ Produces most freshwater via evaporation.

○ Marine biodiversity has declined by ~50% over the past 50 years due to overfishing.

②―② Coral reefs (marine): habitats built from the exoskeletons of corals

○ Occur on tropical continental shelves (<200 m depth) with warm, clear water.

○ The most diverse aquatic habitats; species density per unit area rivals that of tropical rainforests.

○ Corals filter organic matter and live in symbiosis with algae, making them sensitive to environmental change.

②―③ Estuaries (marine): where river freshwater enters the sea

○ Salinity varies widely: near-marine in dry periods, near-freshwater during rains

○ Nursery grounds for ~75% of commercially traded fish populations and for abundant shellfish.

○ Salt-marsh vegetation buffers against erosion and stabilizes shorelines.

○ Threatened by habitat loss and eutrophication from human activities.

⑷ Environmental Microbiology

⑸ Human habitats: humans have altered ~50% of Earth’s surface.

① Energy and natural resources

○ Energy use (e.g., fossil fuels): reliance on imported energy resources can dull awareness of environmental damage.

○ Natural resources: sustaining life requires substantial natural materials—food, housing, water, etc.

○ Ecological footprint: the land area required to support human activities, which is much larger than the area actually occupied.

② Waste production

○ Sewage pollution: factories discharge semi-solid waste as sludge and chemicals as industrial effluent → more advanced wastewater treatment in developed countries

○ Solid waste: most solid waste is stored in sanitary landfills (in developed countries) or open dumps (in developing countries).

③ Air pollution

○ Primary pollutants: emitted from burning fossil fuels such as coal and oil.

○ CO2, CH4: absorb infrared radiation and cause the greenhouse effect.

○ SO2, SO3: dissolve in water to form acids, producing acid rain; lichens are indicator species of acid rain.

○ N2O, NO, NO2: contribute to acid rain or act as secondary pollutants.

○ Hydrocarbons: precursors of secondary pollutants; irritate eyes and bronchi.

○ CFCs: deplete the ozone layer.

○ Fine particulate matter (PM)

○ Secondary pollutants: formed when primary pollutants undergo reactions under ultraviolet light.

○ Ozone, formaldehyde, PAN: cause respiratory diseases.

○ Smog episodes: involve formaldehyde, PAN, SO2

④ Water pollution

○ Dissolved Oxygen (DO)

○ Biochemical Oxygen Demand (BOD)

○ Chemical Oxygen Demand (COD)

⑤ Soil pollution and biomagnification

○ Soil acidification from chemical fertilizers and pesticides

○ Mercury (Minamata disease), cadmium (Itai-itai disease)



Input: 2020.10.25 19:34

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